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More documentation can be found on the ARB website.
Last update on 08. Apr 2009 .
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Export Tree to File

OCCURRENCE

ARB_NT/Tree/Copy\Delete\Export\Import/EXPORT

 

DESCRIPTION

Writes a tree to file in Newick format

Press the 'EXPORT' button to display the 'TREE SAVE' window.

Select a tree file from the 'Directories and Files' subwindow or type the file name to the 'FILE NAME' subwindow.

NEWICK TREE FORMAT

  • Nodetype
    • Species name

      This is the normal format using species names as leaf names.

    • NDS

      (Export only!) This uses the current NDS tree settings as leaf names.


  • Save branch lengths

    if marked, branchlengths are written to the tree file.

  • Save bootstraps

    if marked, bootstraps are written to the tree file.

  • Save groupnames

    if marked, groupnames are written to the tree file.


ORS TANSFER BINARY FORMAT

Special format used by our database administrators. You need a special program to use it.

ARB_XML TREE FORMAT

Simple XML Format (can't load yet)

 

NOTES

If you select both 'Save groupnames' and 'Save bootstraps', other programs may be unable to load the tree or at least unable to interpret the bootstrap values correctly.

If a suffix is displayed in or typed to the 'SUFFIX' subwindow, only the corresponding file names will be displayed. The suffix is automatically appended to the file name typed to the 'FILE NAME' subwindow.

 

WARNINGS

Tree data written with the 'NDS' option cannot be reimported to the database without data loss!

It's possible to reload such a tree, but it's leafs will not be linked to the correct species.

 

BUGS

No bugs known