Actual source code: petscis.h

  1: /*
  2:    An index set is a generalization of a subset of integers.  Index sets
  3:    are used for defining scatters and gathers.
  4: */
 7:  #include petsc.h


 12: /*S
 13:      IS - Abstract PETSc object that indexing.

 15:    Level: beginner

 17:   Concepts: indexing, stride

 19: .seealso:  ISCreateGeneral(), ISCreateBlock(), ISCreateStride(), ISGetIndices(), ISDestroy()
 20: S*/
 21: typedef struct _p_IS* IS;

 23: /*
 24:     Default index set data structures that PETSc provides.
 25: */
 26: typedef enum {IS_GENERAL=0,IS_STRIDE=1,IS_BLOCK = 2} ISType;
 27: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT   ISCreateGeneral(MPI_Comm,PetscInt,const PetscInt[],IS *);
 28: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT   ISCreateGeneralWithArray(MPI_Comm,PetscInt,PetscInt[],IS *);
 29: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT   ISCreateBlock(MPI_Comm,PetscInt,PetscInt,const PetscInt[],IS *);
 30: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT   ISCreateStride(MPI_Comm,PetscInt,PetscInt,PetscInt,IS *);

 32: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT   ISDestroy(IS);

 34: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT   ISSetPermutation(IS);
 35: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT   ISPermutation(IS,PetscTruth*);
 36: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT   ISSetIdentity(IS);
 37: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT   ISIdentity(IS,PetscTruth*);

 39: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT   ISGetIndices(IS,PetscInt *[]);
 40: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT   ISRestoreIndices(IS,PetscInt *[]);
 41: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT   ISGetSize(IS,PetscInt *);
 42: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT   ISGetLocalSize(IS,PetscInt *);
 43: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT   ISInvertPermutation(IS,PetscInt,IS*);
 44: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT   ISView(IS,PetscViewer);
 45: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT   ISEqual(IS,IS,PetscTruth *);
 46: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT   ISSort(IS);
 47: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT   ISSorted(IS,PetscTruth *);
 48: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT   ISDifference(IS,IS,IS*);
 49: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT   ISSum(IS*,IS);
 50: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT   ISExpand(IS,IS,IS*);

 52: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT   ISBlock(IS,PetscTruth*);
 53: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT   ISBlockGetIndices(IS,PetscInt *[]);
 54: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT   ISBlockRestoreIndices(IS,PetscInt *[]);
 55: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT   ISBlockGetSize(IS,PetscInt *);
 56: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT   ISBlockGetBlockSize(IS,PetscInt *);

 58: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT   ISStride(IS,PetscTruth*);
 59: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT   ISStrideGetInfo(IS,PetscInt *,PetscInt*);

 61: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT   ISStrideToGeneral(IS);

 63: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT   ISDuplicate(IS,IS*);
 64: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT   ISAllGather(IS,IS*);
 65: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT   ISAllGatherIndices(MPI_Comm,PetscInt,const PetscInt[],PetscInt*,PetscInt*[]);

 67: /* --------------------------------------------------------------------------*/

 70: /*S
 71:    ISLocalToGlobalMapping - mappings from an arbitrary
 72:       local ordering from 0 to n-1 to a global PETSc ordering 
 73:       used by a vector or matrix.

 75:    Level: intermediate

 77:    Note: mapping from Local to Global is scalable; but Global
 78:   to Local may not be if the range of global values represented locally
 79:   is very large.

 81:    Note: the ISLocalToGlobalMapping is actually a private object; it is included
 82:   here for the MACRO ISLocalToGlobalMappingApply() to allow it to be inlined since
 83:   it is used so often.

 85: .seealso:  ISLocalToGlobalMappingCreate()
 86: S*/
 87: struct _p_ISLocalToGlobalMapping{
 88:   PETSCHEADER(int);
 89:   PetscInt n;                  /* number of local indices */
 90:   PetscInt *indices;           /* global index of each local index */
 91:   PetscInt globalstart;        /* first global referenced in indices */
 92:   PetscInt globalend;          /* last + 1 global referenced in indices */
 93:   PetscInt *globals;           /* local index for each global index between start and end */
 94: };
 95: typedef struct _p_ISLocalToGlobalMapping* ISLocalToGlobalMapping;

 97: /*E
 98:     ISGlobalToLocalMappingType - Indicates if missing global indices are 

100:    IS_GTOLM_MASK - missing global indices are replaced with -1
101:    IS_GTOLM_DROP - missing global indices are dropped

103:    Level: beginner

105: .seealso: ISGlobalToLocalMappingApply()

107: E*/
108: typedef enum {IS_GTOLM_MASK,IS_GTOLM_DROP} ISGlobalToLocalMappingType;

110: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingCreate(MPI_Comm,PetscInt,const PetscInt[],ISLocalToGlobalMapping*);
111: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingCreateNC(MPI_Comm,PetscInt,const PetscInt[],ISLocalToGlobalMapping*);
112: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingCreateIS(IS,ISLocalToGlobalMapping *);
113: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingView(ISLocalToGlobalMapping,PetscViewer);
114: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingDestroy(ISLocalToGlobalMapping);
115: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingApplyIS(ISLocalToGlobalMapping,IS,IS*);
116: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISGlobalToLocalMappingApply(ISLocalToGlobalMapping,ISGlobalToLocalMappingType,PetscInt,const PetscInt[],PetscInt*,PetscInt[]);
117: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingGetSize(ISLocalToGlobalMapping,PetscInt*);
118: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping,PetscInt*,PetscInt*[],PetscInt*[],PetscInt**[]);
119: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingRestoreInfo(ISLocalToGlobalMapping,PetscInt*,PetscInt*[],PetscInt*[],PetscInt**[]);
120: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingBlock(ISLocalToGlobalMapping,PetscInt,ISLocalToGlobalMapping*);

122: #define ISLocalToGlobalMappingApply(mapping,N,in,out) 0;\
123: {\
124:   PetscInt _i,*_idx = (mapping)->indices,_Nmax = (mapping)->n;\
125:   for (_i=0; _i<N; _i++) {\
126:     if ((in)[_i] < 0) {(out)[_i] = (in)[_i]; continue;}\
127:     if ((in)[_i] >= _Nmax) SETERRQ3(PETSC_ERR_ARG_OUTOFRANGE,"Local index %D too large %D (max) at %D",(in)[_i],_Nmax,_i);\
128:     (out)[_i] = _idx[(in)[_i]];\
129:   }\
130: }

132: /* --------------------------------------------------------------------------*/
133: /*E
134:     ISColoringType - determines if the coloring is for the entire parallel grid/graph/matrix
135:                      or for just the local ghosted portion

137:     Level: beginner

139: $   IS_COLORING_LOCAL - does not include the colors for ghost points
140: $   IS_COLORING_GHOSTED - includes colors for ghost points

142: .seealso: DAGetColoring()
143: E*/
144: typedef enum {IS_COLORING_LOCAL,IS_COLORING_GHOSTED} ISColoringType;
145: typedef unsigned PETSC_IS_COLOR_VALUE_TYPE ISColoringValue;
146: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISAllGatherColors(MPI_Comm,PetscInt,ISColoringValue*,PetscInt*,ISColoringValue*[]);

148: /*S
149:      ISColoring - sets of IS's that define a coloring
150:               of the underlying indices

152:    Level: intermediate

154:     Notes:
155:         One should not access the *is records below directly because they may not yet 
156:     have been created. One should use ISColoringGetIS() to make sure they are 
157:     created when needed.

159: .seealso:  ISColoringCreate(), ISColoringGetIS(), ISColoringView(), ISColoringGetIS()
160: S*/
161: struct _n_ISColoring {
162:   PetscInt        refct;
163:   PetscInt        n;                /* number of colors */
164:   IS              *is;              /* for each color indicates columns */
165:   MPI_Comm        comm;
166:   ISColoringValue *colors;          /* for each column indicates color */
167:   PetscInt        N;                /* number of columns */
168:   ISColoringType  ctype;
169: };
170: typedef struct _n_ISColoring* ISColoring;

172: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISColoringCreate(MPI_Comm,PetscInt,PetscInt,const ISColoringValue[],ISColoring*);
173: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISColoringDestroy(ISColoring);
174: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISColoringView(ISColoring,PetscViewer);
175: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISColoringGetIS(ISColoring,PetscInt*,IS*[]);
176: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISColoringRestoreIS(ISColoring,IS*[]);
177: #define ISColoringReference(coloring) ((coloring)->refct++,0)
178: #define ISColoringSetType(coloring,type) ((coloring)->ctype = type,0)

180: /* --------------------------------------------------------------------------*/

182: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISPartitioningToNumbering(IS,IS*);
183: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISPartitioningCount(IS,PetscInt[]);

185: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISCompressIndicesGeneral(PetscInt,PetscInt,PetscInt,const IS[],IS[]);
186: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISCompressIndicesSorted(PetscInt,PetscInt,PetscInt,const IS[],IS[]);
187: EXTERN PetscErrorCode PETSCVEC_DLLEXPORT ISExpandIndicesGeneral(PetscInt,PetscInt,PetscInt,const IS[],IS[]);

190: #endif