Open Cancer TherApeutic Discovery (OCTAD)


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Documentation for package ‘octad’ version 1.6.0

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computeCellLine Compute Correlation between cell lines and vector of case ids.
computeRefTissue Compute correlating reference control samples.
diffExp Compute differential expression
loadOctadCounts Load octad expression data
octad Open Cancer TherApeutic Discovery (OCTAD) database package
octadDrugEnrichment Compute Drug enrichment
res_example Differential expression example for HCC vs adjacent liver tissue computed in diffExp() function
runsRGES Compute sRGES
sRGES_example Data of computed example sRGEs for HCC vs liver adjacent tissues on octad.small dataset
topLineEval Evaluate cell lines