Integration of TNT in R

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Documentation for package ‘nitro’ version 0.1.0

• DESCRIPTION file.

Help Pages

NitroBootstrap	Define a bootstrap resampling analysis
NitroBranchBreak	Define parameters for branch breaking
NitroBranchSwap	Define a branch swapping analysis
NitroConstraint	Define constrained tree search
NitroConstraintSectorialSearch	Define a constraint sectorial search analysis
NitroDriven	Define a driven search
NitroEqualWeights	Define equal weights analysis
NitroImplicitEnum	Define an implicit enumeration analysis
NitroImpliedWeights	Define implied weights analysis
NitroJackknife	Define jackknife resampling analysis
NitroMethodsBase	Define tree searches
NitroRandomSectorialSearch	Define a random sectorial search analysis
NitroRatchet	Define a parsimony ratchet analysis
NitroResampleBase	Define resampling parameters
NitroSectorialSearch	Define a sectorial search analysis
NitroSymmetricResample	Define symmetric resampling analysis
NitroTreeDrift	Define tree drift properties
NitroTreeFuse	Define tree fusing properties
NitroTreeHybridize	Define tree hybridization properties
NitroTrees	Define analysis results
NitroTreeSearch	Define tree searches
NitroWeightsBase	Define tree searches
schmd	Syntactic Sugar for Search Method Construction
tnt	Execute a TNT search
tnt_output_parse	Extracts trees from TNT output.
write_tnt_nexus	Write a TNT-compatible nexus file