Tomo-seq data analysis


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Documentation for package ‘tomoda’ version 1.14.0

Help Pages

corHeatmap Correlation heatmap of sections
createTomo Create an object representing tomo-seq data
createTomo-method Create an object representing tomo-seq data
embedPlot Embedding plot for sections
expHeatmap Expression heatmap
findPeak Find peak in a vector
findPeakGene Find peak genes
geneCorHeatmap Correlation heatmap of genes
geneEmbedPlot Embedding plot for genes
hierarchClust Hierarchical clustering across sections
kmeansClust K-Means clustering across sections
linePlot Line plot for expression traces
normalizeTomo Normalize data
runPCA Perform PCA
runTSNE Perform TSNE
runUMAP Perform UMAP
scaleTomo Scale data
tomoMatrix Create an object from matrix
tomoSummarizedExperiment Create an object from SummarizedExperiment
zh.data A raw read count matrix of zebrafish injured heart.