calculatePvalue |
Calculate the significance of the matches for the reference and alternate alleles for the for their PWM |
encodemotif |
MotifDb object containing motif information from the known and discovered motifs for the ENCODE TF ChIP-seq datasets. |
example.results |
Example Results from motifbreakR |
factorbook |
MotifDb object containing motif information from around the genomic regions bound by 119 human transcription factors in Factorbook. |
hocomoco |
MotifDb object containing motif information from Homo Sapiens Comprehensive Model Collection (HOCOMOCO) of transcription factor (TF) binding models |
homer |
MotifDb object containing motif information from motif databases included in HOMER. |
motifbreakR |
Predict The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites. |
motifbreakR_motif |
MotifDb object containing motif information from the motif databases of HOCOMOCO, Homer, FactorBook and ENCODE |
plotMB |
Plot a genomic region surrounding a genomic variant, and potentially disrupted motifs |
snps.from.file |
Import SNPs from a BED file or VCF file for use in motifbreakR |
snps.from.rsid |
Import SNPs from rsid for use in motifbreakR |
variants.from.file |
Import SNPs from a BED file or VCF file for use in motifbreakR |